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Skin pigmentation was the natural coloration of one's skin. It could also be referred to as complexion.

When Doctor Phlox was studying epithelial cells from a Xindi pilot he found the pigmentation far more colorful than expected and later identified the cells as scales. (ENT: "The Xindi")

Harry Mudd's complexion was "fair", according to his police record. (TOS: "Mudd's Women")

In 2368, while preparing to alter Data's appearance to that of a Romulan, Doctor Beverly Crusher noted that changing his skin pigmentation shouldn't be too difficult, while changing it back might be. (TNG: "Unification I")

In 2373, several Borg drones regained their original pigmentation after their links were severed in an electrokinetic storm. (VOY: "Unity")

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