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Quasi-molecular flux was the state of a solid material, like the metal in a starship's bulkhead, when it was passed through by spatially-inverted tetryon particles, creating a subspace particle stream. The structure of the material was thereby altered on a sub-atomic level.
The metal in the bulkhead in cargo bay 4 aboard the USS Enterprise-D was brought into quasi-molecular flux by the tampering of solanogen-based lifeforms who were attempting to form a spatial rupture in the cargo bay. (TNG: "Schisms")