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Paperwork described any written work that needed to be completed, whether or not they were written on actual paper. It could also refer to specific documents required to fulfill regulations.

In 2004, Loomis used the excuse that he needed the right and complete paperwork from Lawrence Strode to bring him to the blood bank. In reality he gave Strode a sedative and turned him over to the Xindi-Reptilians. (ENT: "Carpenter Street")

Following his cure of the Borg assimilation in 2153, Phlox was doing some paperwork in sickbay. (ENT: "Regeneration")

Admiral Matthew Dougherty told Captain Jean-Luc Picard that he needed his paperwork tomorrow following the capture of Data on the Ba'ku planet. (Star Trek: Insurrection)