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(covers information from several alternate timelines)
In 2155, in the mirror universe, Doctor Phlox was summoned to the ISS Avenger to deal with an unspecified medical emergency. It was, in fact, a rouse by T'Pol and Soval to allow them to speak with him and convince him to join their cause. (ENT: "In a Mirror, Darkly, Part II")
In 2367, Lieutenant Commander Geordi La Forge declared a medical emergency before beaming up to the USS Enterprise-D with Lieutenant Commander Susanna Leijten, who was suffering from an alien retro-DNA virus. (TNG: "Identity Crisis")
In 2369, Doctor Julian Bashir and Chief Miles O'Brien were called to an unexplained medical emergency on Bajor. In the end, it turned out to be the Dal'Rok, a mythical energy creature that manifested itself through an Orb. (DS9: "The Storyteller")